YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNGC6_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDTCGPKGV KSQVISGQRE NFVRLDSMDS RYSQSSETGL NKCTLNIQGG PKRFAQGSKA  60
   61 SSGSFKKGFR KGSEGLWSIG RSIGLGVSRA VFPEDLEVSE KKIFDPQDKF LLLCNKLFVA 120
  121 SCILAVSVDP LFLYLPFIND KAKCVGIDRK LAIIVTTIRT VIDSFYLFHM ALRFRTAYVA 180
  181 PSSRVFGRGE LVIDPAQIAK RYLQQYFIID LLSVLPVPQI IVWRFLYTSR GANVLATKQA 240
  241 LRYIVLVQYI PRFLRMYPLS SELKRTAGVF AETAWAGAAY YLLLYMLASH IVGALWYLLA 300
  301 LERNNDCWSK ACHNNQNCTR NFLFCGNQNM KGYAAWDNIK VSYLQLKCPV NVPEDEEPPF 360
  361 DFGIYLRALS SGIVSSKNFV SKYFFCLWWG LQNLSTLGQG LETSTYPGEV IFSITLAIAG 420
  421 LLLFALLIGN MQTYLQSLTI RLEEMRVKRR DSEQWMHHRM LPPELRERVR RYDQYKWLET 480
  481 RGVDEENLVQ NLPKDLRRDI KRHLCLALVR RVPLFENMDE RLLDAICERL KPCLFTEKSY 540
  541 LVREGDPVNE MLFIIRGRLE SVTTDGGRSG FYNRSLLKEG DFCGDELLTW ALDPKSGSNL 600
  601 PSSTRTVKAL TEVEAFALIA DELKFVASQF RRLHSRQVQH TFRFYSQQWR TWAACFMQAA 660
  661 WRRYIKRKKL EQLRKEEEEE EAAAASVIAG GSPYSIRATF LASKFAANAL RSVHKNRTAK 720
  721 STLLLSSTKE LVKFQKPPEP DFSAEDH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle