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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNGC3_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNPQRNKFV RFNGNDDEFS TKTTRPSVSS VMKTVRRSFE KGSEKIRTFK RPLSVHSNKN  60
   61 KENNKKKKIL RVMNPNDSYL QSWNKIFLLL SVVALAFDPL FFYIPYVKPE RFCLNLDKKL 120
  121 QTIACVFRTF IDAFYVVHML FQFHTGFITP SSSGFGRGEL NEKHKDIALR YLGSYFLIDL 180
  181 LSILPIPQVV VLAIVPRMRR PASLVAKELL KWVIFCQYVP RIARIYPLFK EVTRTSGLVT 240
  241 ETAWAGAALN LFLYMLASHV FGSFWYLISI ERKDRCWREA CAKIQNCTHA YLYCSPTGED 300
  301 NRLFLNGSCP LIDPEEITNS TVFNFGIFAD ALQSGVVESR DFPKKFFYCF WWGLRNLSAL 360
  361 GQNLKTSAFE GEIIFAIVIC ISGLVLFALL IGNMQKYLQS TTVRVEEMRV KRRDAEQWMS 420
  421 HRMLPDDLRK RIRKYEQYKW QETKGVEEEA LLSSLPKDLR KDIKRHLCLK LLKKVPWFQA 480
  481 MDDRLLDALC ARLKTVLYTE KSYIVREGEP VEDMLFIMRG NLISTTTYGG RTGFFNSVDL 540
  541 VAGDFCGDLL TWALDPLSSQ FPISSRTVQA LTEVEGFLLS ADDLKFVATQ YRRLHSKQLR 600
  601 HMFRFYSVQW QTWAACFIQA AWKRHCRRKL SKALREEEGK LHNTLQNDDS GGNKLNLGAA 660
  661 IYASRFASHA LRNLRANAAA RNSRFPHMLT LLPQKPADPE FPMDET

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle