YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.98
Transmembrane Helix	91	112	0.92
Non-Cytoplasmic	113	140	0.81
Transmembrane Helix	141	165	0.86
Cytoplasmic	166	183	0.70
Transmembrane Helix	184	208	0.81
Non-Cytoplasmic	209	214	0.67
Transmembrane Helix	215	232	0.81
Cytoplasmic	233	252	0.90
Transmembrane Helix	253	275	0.89
Non-Cytoplasmic	276	286	0.88
Transmembrane Helix	287	307	0.92
Cytoplasmic	308	315	0.86
Transmembrane Helix	316	335	0.88
Non-Cytoplasmic	336	340	0.81
Transmembrane Helix	341	361	0.95
Cytoplasmic	362	379	0.92
Transmembrane Helix	380	400	0.93
Non-Cytoplasmic	401	465	0.93
Transmembrane Helix	466	496	0.79
Cytoplasmic	497	510	0.54
Transmembrane Helix	511	532	0.77
Non-Cytoplasmic	533	539	0.47
Transmembrane Helix	540	561	0.72
Cytoplasmic	562	779	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT  60
   61 CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF LIGLATGLVG FLNNLGVENI 120
  121 AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG 180
  181 IDAYSILAPS TLFVKIFGSI FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW 240
  241 LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA 300
  301 VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL 360
  361 VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL SQCTPCPIGI EEGKCPSVGR 420
  421 SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT 480
  481 YGIAIPSGLF IPVILAGASY GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV 540
  541 ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK 600
  601 DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG 660
  661 KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS EEEMEMYVDL HPITNTSPYT 720
  721 VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK