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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMA4_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.38
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQNKEEEK KKVKKLQKSY FDVLGICCTS EVPIIENILK SLDGVKEYSV IVPSRTVIVV  60
   61 HDSLLISPFQ IAKALNEARL EANVRVNGET SFKNKWPSPF AVVSGLLLLL SFLKFVYSPL 120
  121 RWLAVAAVAA GIYPILAKAF ASIKRPRIDI NILVIITVIA TLAMQDFMEA AAVVFLFTIS 180
  181 DWLETRASYK ATSVMQSLMS LAPQKAIIAE TGEEVEVDEV KVDTVVAVKA GETIPIDGIV 240
  241 VDGNCEVDEK TLTGEAFPVP KQRDSTVWAG TINLNGYICV KTTSLAGDCV VAKMAKLVEE 300
  301 AQSSKTKSQR LIDKCSQYYT PAIILVSACV AIVPVIMKVH NLKHWFHLAL VVLVSGCPCG 360
  361 LILSTPVATF CALTKAATSG LLIKSADYLD TLSKIKIVAF DKTGTITRGE FIVIDFKSLS 420
  421 RDINLRSLLY WVSSVESKSS HPMAATIVDY AKSVSVEPRP EEVEDYQNFP GEGIYGKIDG 480
  481 NDIFIGNKKI ASRAGCSTVP EIEVDTKGGK TVGYVYVGER LAGFFNLSDA CRSGVSQAMA 540
  541 ELKSLGIKTA MLTGDNQAAA MHAQEQLGNV LDVVHGDLLP EDKSRIIQEF KKEGPTAMVG 600
  601 DGVNDAPALA TADIGISMGI SGSALATQTG NIILMSNDIR RIPQAVKLAR RARRKVVENV 660
  661 CLSIILKAGI LALAFAGHPL IWAAVLVDVG TCLLVIFNSM LLLREKKKIG NKKCYRASTS 720
  721 KLNGRKLEGD DDYVVDLEAG LLTKSGNGQC KSSCCGDKKN QENVVMMKPS SKTSSDHSHP 780
  781 GCCGDKKEEK VKPLVKDGCC SEKTRKSEGD MVSLSSCKKS SHVKHDLKMK GGSGCCASKN 840
  841 EKGKEVVAKS CCEKPKQQVE SVGDCKSGHC EKKKQAEDIV VPVQIIGHAL THVEIELQTK 900
  901 ETCKTSCCDS KEKVKETGLL LSSENTPYLE KGVLIKDEGN CKSGSENMGT VKQSCHEKGC 960
  961 SDEKQTGEIT LASEEETDDQ DCSSGCCVNE GTVKQSFDEK KHSVLVEKEG LDMETGFCCD1020
 1021 AKLVCCGNTE GEVKEQCRLE IKKEEHCKSG CCGEEIQTGE ITLVSEEETE STNCSTGCCV1080
 1081 DKEEVTQTCH EKPASLVVSG LEVKKDEHCE SSHRAVKVET CCKVKIPEAC ASKCRDRAKR1140
 1141 HSGKSCCRSY AKELCSHRHH HHHHHHHHHV SA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle