YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PINI_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	28	0.88
Cytoplasmic	29	40	0.79
Transmembrane Helix	41	61	0.93
Non-Cytoplasmic	62	70	0.81
Transmembrane Helix	71	90	0.90
Cytoplasmic	91	99	0.81
Transmembrane Helix	100	121	0.91
Non-Cytoplasmic	122	131	0.82
Transmembrane Helix	132	152	0.93
Cytoplasmic	153	475	0.99
Transmembrane Helix	476	495	0.85
Non-Cytoplasmic	496	508	0.74
Transmembrane Helix	509	528	0.89
Cytoplasmic	529	542	0.75
Transmembrane Helix	543	562	0.89
Non-Cytoplasmic	563	567	0.60
Transmembrane Helix	568	588	0.69
Cytoplasmic	589	596	0.61
Transmembrane Helix	597	620	0.91
Non-Cytoplasmic	621	622	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA  60
   61 ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW TITLFSLSTL PNTLVMGIPL 120
  121 LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD 180
  181 IMSLDGRQPL ETEAEIKEDG KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS 240
  241 LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK 300
  301 PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ 360
  361 DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND HQKDVKISVP QGNSNDNQYV 420
  421 EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY 480
  481 SSLFGITWSL ISFKWNIEMP ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA 540
  541 AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST 600
  601 AVIFGMLIAL PITLLYYILL GL