YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKCC_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRHIQYSIV VPVYNEELVI HETYQRLKEV MDQTKENYEL LFVNDGSKDR SIEILREHSL  60
   61 IDPRVKIIDF SRNFGHQIAI TAGMDYAQGN AIVVIDADLQ DPPELILEMI EKWKEGYEVV 120
  121 YAVRTKRKGE TFFKKQTAAM FYRLLSGMTD IDIPIDTGDF RLMDRKVCDE MKRLKEKNPF 180
  181 VRGLVSWVGS KQTAVEYVRD ERLAGETKYP LKKMLKLSMD GITTFSHKPL KLASYAGILM 240
  241 SGTGFLYMFI VLYLKLFTDS TITGWSSLIV IQLLFSGIVL LILGVIGEYI GRIYDEAKDR 300
  301 PLYIVQKSYG IENKRLYRDQ HMS

Type	Start	End	Confidence
Cytoplasmic	1	231	0.91
Transmembrane Helix	232	254	0.89
Non-Cytoplasmic	255	267	0.68
Transmembrane Helix	268	290	0.87
Cytoplasmic	291	323	0.89