YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ret-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCQCQKVL DVIYWRDAKK SAIVLSLALL VLFVLAKYPL LTVVTYSLLL ALGAAAGFRV  60
   61 FKKVEAQIKK TDSEHPFSEI LAQDLTLPQE KVHAQADVFV EHATCIANKL KKLVFVESPL 120
  121 ESIKFGLVLW SLTYIASWFS GFTLAILGLL GVFSVPKVYE SNQEAIDPHL ATISGHLKNV 180
  181 QNIIDEKLPF LRSAPVAAEE KKDQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	36	0.91
Non-Cytoplasmic	37	42	0.54
Transmembrane Helix	43	61	0.77
Cytoplasmic	62	129	0.76
Transmembrane Helix	130	153	0.85
Non-Cytoplasmic	154	204	0.76