YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.99
Transmembrane Helix	84	105	0.87
Non-Cytoplasmic	106	113	0.73
Transmembrane Helix	114	135	0.84
Cytoplasmic	136	153	0.73
Transmembrane Helix	154	178	0.80
Non-Cytoplasmic	179	270	0.97
Transmembrane Helix	271	292	0.92
Cytoplasmic	293	299	0.82
Transmembrane Helix	300	321	0.91
Non-Cytoplasmic	322	350	0.92
Transmembrane Helix	351	371	0.86
Cytoplasmic	372	382	0.90
Transmembrane Helix	383	406	0.91
Non-Cytoplasmic	407	448	0.96
Transmembrane Helix	449	471	0.93
Cytoplasmic	472	491	0.90
Transmembrane Helix	492	515	0.87
Non-Cytoplasmic	516	528	0.88
Transmembrane Helix	529	551	0.93
Cytoplasmic	552	571	0.95
Transmembrane Helix	572	595	0.94
Non-Cytoplasmic	596	609	0.88
Transmembrane Helix	610	628	0.96
Cytoplasmic	629	673	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSDFKQL KQTRTKSEET TRSASNETVN DDNRSTTTEE IIPIKKTSNA TAISNIGFKS  60
   61 VTNLALENIG LDTKMEGPTW TSKWEAITAT LSFVTCSGNI WFFPYLCGYY GGWFPYQFTF 120
  121 CYVFIAVPLL YLETALGQYA SASPLSVFSR MAPAMAGLSA GMCFIMVFRT ISLSVWAIYD 180
  181 LTIFTHASQS IWSTSPWESC QESQSGDYCV NYKLSSKCTW IQPGSDKECD EYQEMLIATR 240
  241 GFQQRKSPFM SFVHGLMYKR SITMNDWEPP SVTSIICAVC LWIIIGIISI GGSKVLGRTG 300
  301 IVALTLLLVG TIMLLSYGMS LNDTTNVFTA FFYQSEGYED KWMWVWSWAD AAAHALRALN 360
  361 VGCGGIQKFA SLNNFHNKIH RDVLLISIVS FVFYICTGLL SFMFMAEIGR LYYPDLEASE 420
  421 RIQLYATPVM IESVISEILT NSSMGSIWVF LFWLTLAACS IQGISSYIWV ISSMIVERLN 480
  481 GSRRKYGKAL ASWHKRAIIL AIMSVTGLIS SLPFLGNGGI NLMSSIETFA SYGTIFIAFV 540
  541 EVITVSYVYG FKRFSVNIRA MIGGHGPPNV FWWLNWLVIS PILLIVTFGC IVATFGQKKA 600
  601 FNENSIVSDP IGYSLLVMPC IFVILYFLRD EYDRRKNMEP FVVMIRATGD WGPMNPEDRR 660
  661 NAVKFERQLR VRY