YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fpn-1.3
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMFFNNFSI LLQVILLVVC KSENQVPALL YLAILFGAIN RLFLNAEKSM IARDWVVALN  60
   61 GKNELSRQNA MLTGFDQLLN ILSPIVVGTL LTKFGMHQTL IVFGIYSMLS LFSKLIFLSL 120
  121 TYNQNVSLQN RQEGYCSLPI SDEEPLFKPS KPRGVISTYW KQTTFCAAFG IALFYKTVMG 180
  181 FDNLAVGYAT SASDLSVITI GALKSYGAVA GMVGVISYAF LEKRIGII

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.40
Transmembrane Helix	26	44	0.61
Cytoplasmic	45	71	0.76
Transmembrane Helix	72	92	0.68
Non-Cytoplasmic	93	99	0.59
Transmembrane Helix	100	118	0.87
Cytoplasmic	119	157	0.89
Transmembrane Helix	158	179	0.84
Non-Cytoplasmic	180	199	0.84
Transmembrane Helix	200	221	0.90
Cytoplasmic	222	228	0.93