YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.87
Transmembrane Helix	108	127	0.75
Non-Cytoplasmic	128	148	0.79
Transmembrane Helix	149	169	0.92
Cytoplasmic	170	178	0.76
Transmembrane Helix	179	200	0.86
Non-Cytoplasmic	201	245	0.82
Transmembrane Helix	246	267	0.86
Cytoplasmic	268	325	0.90
Transmembrane Helix	326	347	0.81
Non-Cytoplasmic	348	364	0.86
Transmembrane Helix	365	386	0.94
Cytoplasmic	387	523	0.98
Transmembrane Helix	524	545	0.93
Non-Cytoplasmic	546	556	0.83
Transmembrane Helix	557	577	0.90
Cytoplasmic	578	586	0.89
Transmembrane Helix	587	608	0.65
Non-Cytoplasmic	609	619	0.52
Transmembrane Helix	620	635	0.32
Cytoplasmic	636	648	0.50
Transmembrane Helix	649	672	0.90
Non-Cytoplasmic	673	725	0.69
Transmembrane Helix	726	747	0.89
Cytoplasmic	748	921	0.86
Transmembrane Helix	922	942	0.90
Non-Cytoplasmic	943	991	0.93
Transmembrane Helix	992	1013	0.89
Cytoplasmic	1014	1101	0.77
Transmembrane Helix	1102	1126	0.90
Non-Cytoplasmic	1127	1181	0.63
Transmembrane Helix	1182	1202	0.88
Cytoplasmic	1203	1213	0.56
Transmembrane Helix	1214	1234	0.84
Non-Cytoplasmic	1235	1253	0.67
Transmembrane Helix	1254	1277	0.72
Cytoplasmic	1278	1302	0.60
Transmembrane Helix	1303	1328	0.80
Non-Cytoplasmic	1329	1344	0.54
Transmembrane Helix	1345	1361	0.44
Cytoplasmic	1362	1398	0.67
Transmembrane Helix	1399	1422	0.84
Non-Cytoplasmic	1423	2027	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPIAASEII PSPIHPRKIS INDRLFEIRT PRPGEMIKEA VQMAVWPALP RLAAEEARRE  60
   61 QKAESGTFVR KTTLSSNAPV KEKGPSSLFI FAEDNIIRRN AKAIIEWGPF EYFILLTIIG 120
  121 NCVVLSMEQH LPKNDKKALS EWLERTEPYF MGIFCLECVL KVIAFGFALH KGSYLRSGWN 180
  181 IMDFIVVVSG VVTMLPFSPA TQTANQPVDS VDLRTLRAVR VLRPLKLVSG IPSLQVVLKS 240
  241 ILCAMAPLLQ IGLLVLFAII IFAIIGLEFY SGAFHSACYN ERGEIENVSE RPMPCTNKTS 300
  301 PMGVYNCDVK GTTCLQKWIG PNYGITSFDN IGFAMITVFQ CITMEGWTTV MYYTNDSLGS 360
  361 TYNWAYFIPL IVLGSFFMLN LVLGVLSGEF AKERERVENR REFLKLRRQQ QIERELNGYL 420
  421 EWILTAEEVI LKEDRTTEEE KAAIMEARRR AANKKLKQAS KQQSTETEED FEEDEDEMEE 480
  481 EYVDEGGTVE DEFAERKKRG CCHSVGKFIK QLRIQIRIMV KTQIFYWSVI TLVFLNTCCV 540
  541 ASEHYGQPQW FTDFLKYAEF VFLGIFVVEM LLKLFAMGSR TYFASKFNRF DCVVIVGSAA 600
  601 EVIWAEVYGG SFGISVMRAL RLLRIFKLTS YWVSLRNLVR SLMNSMRSII SLLFLLFLFI 660
  661 LIFALLGMQL FGGRFNFPTM HPYTHFDTFP VALITVFQIL TGEDWNEVMY LAIESQGGIY 720
  721 SGGWPYSIYF IVLVLFGNYT LLNVFLAIAV DNLANAQELT AAEEADEKAN EIEEESEELD 780
  781 EQYQEGDHCT IDMEGKTAGD MCAVARAMDD LDEECEEEES PFGGPKPMVP YSSMFFLSPT 840
  841 NPFRVLIHSI VCTKYFEMMV MTVICLSSVS LAAEDPVDEE NPRNKVLQYM DYCFTGVFAC 900
  901 EMLLKLIDQG ILLHPGSYCR DFWNILDGIV VTCALFAFGF AGTEGSAGKN LNTIKSLRVL 960
  961 RVLRPLKTIK RIPKLKAVFD CVVNSLKNVF NILIVYFLFQ FIFAVIAVQL FNGKFFFCTD1020
 1021 KNRKFANTCH GQFFVYDNQN DPPRVEQREW RLRPFNYDNT INAMLTLFVV TTGEGWPGIR1080
 1081 QNSMDTTFED QGPSPFFRVE VALFYVMFFI VFPFFFVNIF VALIIITFQE QGEAELSEGD1140
 1141 LDKNQKQCID FALNARPRSL FMPEDKNSTK YRIWRLVTSP PFEYFIMTMI CCNTLILMMK1200
 1201 YYNNPLFYEE ILRLFNTALT AVFTVESILK ILAFGVRNYF RDGWNRFDFV TVVGSITDAL1260
 1261 VTEFGGHFVS LGFLRLFRAA RLIRLLQQGY TIRILLWTFV QSFKALPYVC LLIGMLFFIY1320
 1321 AIVGMQVFGN IWLNAATEIN RHNNFQSFFN AVILLFRCAT GEGWQDIMMA AVQGKDCARA1380
 1381 GSAEINFEKG QTCGSNVSYA YFTSFVFLSS FLMLNLFVAV IMDNFDYLTR DSSILGPHHL1440
 1441 DEFIRVWADY DPAATGRIHY SEMYEMLRIM APPVGFGKKC PYRLAYKHLI RMNMPVAEDG1500
 1501 TVHFTTTLFA LIRESLSIKM RPVEEMDEAD EELRLTLKKI WPLKAKKNMV DLVVPPNHEL1560
 1561 CFQKLTVGKI YAGLLILENY RARKSGTEVG GQGLFGGGLR SLVAAAKAAE SQHSSHTPQP1620
 1621 PEETTPIIPQ HAQQFSAAPT MSAQGSLQQM QGTSSGGGQR PYSLFNSFVD TIKSGKQDGD1680
 1681 VTDVQYQSVD QQHEKMNSTG RRLSDMFSKI RRGTSADHNP HQTEHLLAQD NRSPSSPRYR1740
 1741 SMARASPPSP AERYGHPPRY RTESPPSSRS EYQMSIRDPI IRRNRYNTME HSRSSHDPQY1800
 1801 HQDQQQQQQP HHQQHSQHLQ HSHHKTYQNH NQYSRSPIYS DDSSVAESYR REREFRRYQD1860
 1861 STPQDVSEDD DPMPTAVRAR RLPLISTMPT HYESAYQPSS YNQHLNDSYG LGTGYQRDYH1920
 1921 TSHSHSHHPT SQQQQHQPMY STSPLISPRS SHSYYTPRSS QYYEIPSPSP DIYPSYRGSA1980
 1981 SPRRYPTSTV VVAPDREGSS ARVIQAQPGS IPLSDSETED DPRWAIV