YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE34961
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKHEYNKL SLVHLPRKEV HSEKRIPSIL TRTIAVLFVF ALLALVSIGS EGVPQLRNSR  60
   61 DLTKSPCKKR VVGYYSEWEG TEITRSQLGK LTHAVFAFIH MDSEGKLQFK TNQKERFEKL 120
  121 KTAVKNANSD TKVMISIGGD HNSENFGSVL SDSEKKSMFI DSIARFIRQH KIHGVDIYWK 180
  181 WLGNSETEHH DFPSFLKDLK EKLKTVRDDS IISIVAPQAK MDRRHDGYKF DDFMEYIDFV 240
  241 NVFSMDYYGP WPNQWGTPTG PSAPLYGGIG VKKHFNVDST MKYYTCMTED PSKFNMVIPF 300
  301 YVRLWKNVKE PISSGTEVFR RADLKNGAAV GNSYMSRWTV DHEGWELTPA LWDDVTKTPY 360
  361 VWNQETGNFL TFENKKSIEA KLAYAIEHNL GGVWIHLVDK DNENEELLRA VASKKFCASE 420
  421 SENKVTYDC

Type	Start	End	Confidence
Cytoplasmic	1	28	0.89
Transmembrane Helix	29	49	0.83
Non-Cytoplasmic	50	429	0.99