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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cup-5
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLEQIPLES MSRRSTTDRS DFNDNASNAS SNASRRPTIN FQEIMEDLPH HERETGERLR  60
   61 RHLQFFFMNP MEKWKVRHQL PYKLVLQVLK IVFVTMQLIL FAEMRMSHVD FLEDTTTVMR 120
  121 HRFLKEWNDD RDALQYPPAE GRYSVYDDQG LSEHLSFLIN SYYSIRNDSF ASFSYDVVSH 180
  181 PSGNLGAQIS FESIPPIEVL IDRISNVTVN NNTYNFDIRE VKDTKRLNLT ETEVFQIGQS 240
  241 DDAVRDILAT RGITFLPEDA LKISTVQFKF RLRTIHYSPT AGDQKPECYK ISVSIKFDNS 300
  301 RHTGQVHVTL STVVSYVNVC NGRIIKVSGV GWSFDTLLIG GTDIFVLILC ILSLILCCRA 360
  361 LIKAHLLQIK TSDYFENVLK NKITVTDQLD FLNLWYVMIV VNDALIIIGT VAKISIEFQD 420
  421 FDNSLFTLTS IFLGMGALLV YVGVLRYFGF FSQYNILMLT LKRSAPNIMR FMTCAIVLYA 480
  481 GFLIAGWVII GPYSMKFRTL AESSEALFSL LNGDDMFATF YTINDSNTVI KVFGTVYIYL 540
  541 FVSLFIYVVL SLFIAIIMDA YEVVKDRYSD GLRAIEKRGC LRDFVESNPP PSELGSPTTR 600
  601 SAYAPSNLLN LVFNHSPTR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle