YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mig-13
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICIIFLSDS ITSTCFYSGF FDGLDSRNEC KARLDRRLTG FSGLLYSHSK YGQEPYNTSR  60
   61 NCVLMLVAPI GYSIRVRALQ FDVASTENAR TCEKDTLHVF DHETTLDPES YAPARIDDIT 120
  121 SPGPIIGQFC GHFENRILNT SSHNALTLWW HSNPNGSNSK GFKLHWGSFR VSKTGNCVTG 180
  181 EFSCGNGECI PIESACDRFA DCSNGEDLIH SRQMAANCQN IELDPLTTVS GVFVLLFSAT 240
  241 IILSLCGFIM FVCCLCKCLK STIPIKGASS HTTTTTATDY KPDPPQFYPP SPPKMPPPSA 300
  301 ASSYTPRLHH HFEGPLVPSE TSAFHSSNRM QNHYSVNSDI NGDYTYVRND VHRNLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	231	0.96
Transmembrane Helix	232	256	0.86
Cytoplasmic	257	356	0.93