YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nac-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	29	0.87
Non-Cytoplasmic	30	43	0.68
Transmembrane Helix	44	66	0.80
Cytoplasmic	67	76	0.70
Transmembrane Helix	77	101	0.78
Non-Cytoplasmic	102	119	0.69
Transmembrane Helix	120	152	0.72
Cytoplasmic	153	192	0.86
Transmembrane Helix	193	214	0.86
Non-Cytoplasmic	215	245	0.81
Transmembrane Helix	246	268	0.87
Cytoplasmic	269	305	0.83
Transmembrane Helix	306	324	0.73
Non-Cytoplasmic	325	341	0.60
Transmembrane Helix	342	360	0.82
Cytoplasmic	361	416	0.51
Transmembrane Helix	417	451	0.64
Non-Cytoplasmic	452	462	0.46
Transmembrane Helix	463	486	0.83
Cytoplasmic	487	497	0.51
Transmembrane Helix	498	525	0.76
Non-Cytoplasmic	526	551	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSPQRTLI KKLLVLLGPL VAVPLLFFGP EYRCLFSIIF LSTYWIGEAF PIGVTSLFPL  60
   61 ALYPILQIVP SKQISPVYFK DSIVLFMCTL IMAMAVEATG LHRRIALKLL TKVGAKQPVM 120
  121 LLGFMCITSF ISFFVSDTAC TALMCPTAVA LLMSMSDAVQ HLKEDHRKPK PPPDDATVAE 180
  181 KLRIDDMTPQ DAGFCKALIL ACAHASLIGG TAIITSTGPN LVFRENIHKR YPEGQVTMTY 240
  241 LQWMVFAIPP MFVYLLASYI ILVCYFMGPS TFARWFERPS KEEAHLKKLI EKNIQTMYED 300
  301 LGDVSWGEKS VFVFFILLIG SWISRDPGFT PGWGDLLPHR NFISDSVSGV LISCILFVWP 360
  361 KDPFDPIDPM APILKWTDMK SKFSWSCTLL IGAGYAISEG VDKSGLSRLI SCGMKNIFVG 420
  421 MSSLPLQLTV TTIIVIMTEF ASNVSTGSIF IPISLGVAES MGVHPLYLAL PTTVACSFAF 480
  481 MLPISTPPNA VVYDTKVISM VEMIVCGFLL NIACILITSL NMNTWTYFIF SLNIFPENIV 540
  541 ISSENSSYPV C