YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vab-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVQRTTIE AVSAVRPLKI ISLICLVIAV GLMIVALCST SWLKTGSFRT GLFKECTSTN  60
   61 EPTHAAPFPG APAPGSCHKP SRNSGFLTAA AVLLIVALFL TALSTIFNIV GLSKSDVRGK 120
  121 YRWYRIATMI SGFSVLLELT ALIMFPAAFY VKISDYGSRR NWEVDWSYGI AWGATLFTIG 180
  181 ATIMLICDKE HEEVYYKEKT IYNPPPELSD R

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	43	0.92
Non-Cytoplasmic	44	88	0.96
Transmembrane Helix	89	111	0.92
Cytoplasmic	112	125	0.88
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	167	0.90
Transmembrane Helix	168	187	0.95
Cytoplasmic	188	211	0.97