YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amt-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.63
Transmembrane Helix	39	59	0.68
Cytoplasmic	60	76	0.72
Transmembrane Helix	77	96	0.78
Non-Cytoplasmic	97	134	0.89
Transmembrane Helix	135	154	0.91
Cytoplasmic	155	161	0.87
Transmembrane Helix	162	182	0.92
Non-Cytoplasmic	183	195	0.90
Transmembrane Helix	196	217	0.92
Cytoplasmic	218	237	0.84
Transmembrane Helix	238	260	0.82
Non-Cytoplasmic	261	268	0.85
Transmembrane Helix	269	292	0.89
Cytoplasmic	293	298	0.90
Transmembrane Helix	299	319	0.91
Non-Cytoplasmic	320	324	0.74
Transmembrane Helix	325	343	0.94
Cytoplasmic	344	351	0.82
Transmembrane Helix	352	373	0.87
Non-Cytoplasmic	374	398	0.90
Transmembrane Helix	399	422	0.91
Cytoplasmic	423	687	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPEGSIFN ASAMQIVQIH HYAEGSVTPE VDKLYQDDAV WIISSSFIIF TMHSGFGLLE  60
   61 SGSVSAKDEV NIMVKNVVDV VFGGLSYWSC GFGFSYGDIP EWRNPYVGFG KFFYDPTRDY 120
  121 GTRETINQEG WSYASFLFQL SLATTASTIV SGAVAERAKL KSYILLGCIV ILIQALPAHW 180
  181 VWDKEGVFYK KGVVDFAGCS AVHLVGGIIG LIATVFLKPR RNRFNEDSVH QMSSPTNALL 240
  241 GTFLLWWGWF GINAGSVWGI TGGRWRLGAR AAVATIMASI GGGATAITIS FVKTKKLQVN 300
  301 FLINGILSSI VSITAICAVS RPWHALVIGS ISSVFSIAVL PLLDRLHIDD PVGIVPIHLT 360
  361 SSIWGMIAVG IFCEEDKYLG SATNNRSGLL YSWSFELLWV QLQCTAAILI YSATTGFLAL 420
  421 FLISKSPLGL RVTDYEEQIG ADVIEHGLAG TNVARYVLEK PLSTRTFQTV TKAITKWKML 480
  481 AKKKSRQKRM EAAKLKRQEE QETFTNGTAI ANGNGNVLHH RTNATESNGT GAPKRSNGPA 540
  541 FNNQITPLAV SSTVSTARNG PSTGRRTEST AIEIEQPIEA VPPEVVAAAV LPPEERPGPS 600
  601 TNSNVSIEAS VEKSPSSSTS RRSISIRSSP SIHTVSAIST AAPDSRPSTA SATSIISKKS 660
  661 SKNSTVGKFV KAPAPRALSP PDNNPPV