YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32461
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFGGGQSK KAPLIGESGI PAYCLKTIGS RHILVAGGGG ASKTGVLNEI QTHLFTTGSA  60
   61 NQDVGFQSKC VGKFDTGSMA TMNMDVACAF DEISAKYVIA AGQENLCALY MTRAFKLNEE 120
  121 NECLSFEIQK VSQVRSDFHA SNSYQKCVRF DKSSRGKIFA TGGADGHIRI WNAQIVFRAE 180
  181 NEDAQPILTI QAHKADVDDI DFSKDSKTII SVGAEGAFIW STQTGARLLD LQFPIEISRG 240
  241 FKMRSIRCTP LGKASNNTVF VAAYNSISKG SKDQASFLSL WAFNSERNVA RPVVTKLLAK 300
  301 GQSISSLAVS DCGNFTAVGT MSGSVLVFDT HECRRLYFSP ESHGLFVTGI EFVSRTSPSI 360
  361 CEDIQSETPG IASGFQSAVV TLAADKTMQL HRVPYPQPQP FSEYLLIISL VCLIFTWLSS 420
  421 FFIVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	403	0.93
Transmembrane Helix	404	424	0.93
Cytoplasmic	425	425	0.90