YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32233
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.93
Transmembrane Helix	22	43	0.85
Non-Cytoplasmic	44	50	0.70
Transmembrane Helix	51	70	0.87
Cytoplasmic	71	86	0.85
Transmembrane Helix	87	106	0.92
Non-Cytoplasmic	107	114	0.74
Transmembrane Helix	115	135	0.92
Cytoplasmic	136	145	0.79
Transmembrane Helix	146	162	0.94
Non-Cytoplasmic	163	186	0.88
Transmembrane Helix	187	209	0.88
Cytoplasmic	210	229	0.90
Transmembrane Helix	230	252	0.93
Non-Cytoplasmic	253	260	0.86
Transmembrane Helix	261	283	0.90
Cytoplasmic	284	296	0.93
Transmembrane Helix	297	318	0.91
Non-Cytoplasmic	319	325	0.86
Transmembrane Helix	326	347	0.93
Cytoplasmic	348	356	0.86
Transmembrane Helix	357	377	0.64
Non-Cytoplasmic	378	403	0.66
Transmembrane Helix	404	425	0.93
Cytoplasmic	426	434	0.60
Transmembrane Helix	435	456	0.86
Non-Cytoplasmic	457	470	0.65
Transmembrane Helix	471	490	0.94
Cytoplasmic	491	506	0.60
Transmembrane Helix	507	526	0.91
Non-Cytoplasmic	527	562	0.74
Transmembrane Helix	563	584	0.89
Cytoplasmic	585	590	0.50
Transmembrane Helix	591	613	0.84
Non-Cytoplasmic	614	746	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAHDFVKKD DRNFTPTQSS RSASYFVVLV LTKILRCIGV FFVDILAKSS HIVNLLWLCK  60
   61 IICTCILFPL QKPLSAGKSL KRGIMPMVLK LSLMNSVIEV FWFYGITLCG PLRSVLVFEL 120
  121 SSTVLLSAVV SFFKGGNMST PSKTRGFFLL IVGFVALFLM DRDGTIEDPH HTTHAHHSGL 180
  181 NHLFYHLIGL FGMADHKGGL CILLISLLLR TGYETSFRHL AVEVGGAKRL HTLVTAGSAV 240
  241 CLTPVAVLSW ALSSSSGASI GYFHYAALLV IIAVFVFVLD FYAESICFQH VADPVMAAAR 300
  301 WSSVTMFSCA FGLAYLWYGS QNLGDHALTG GVSITVVCFI LASISLTHSN QPKHRGGHFV 360
  361 GISNTGLPLF TYGEAFLQRT SKSLMLFMKE TLNEILMNND SRRIFWFLCV NLGFCGVEFL 420
  421 YGFWTNSLGL ISDGFHMLFD CSALVMGLVA SVMARWPPTR HFTFGFGRVE ILSGFINALF 480
  481 LCVIALFILI EALERLFDPP NINTDRLLFV AISGLIVNLF GMYSLGEHGH SHGGGSSHGH 540
  541 SHGGGGSHGH SHGGGGNANM QGVFLHVLAD TLGSVFVIIS TLLIQWFGWV WVDPLCSLIL 600
  601 SLLIIGSVYP LLVSSISTLL QDVPEEEEFE YHINEILEIE HVESYSNAHM WQHKSDINVA 660
  661 SVHVQVKEEA NAQMIRHRVS NILKSTGATH STVQVEKKTF AHRIQQVCPG YKAGYTVVRG 720
  721 SVIREKKHDH SHHHGHSHDD HSGHHH