YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-8
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.84
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	83	0.83
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	113	0.67
Transmembrane Helix	114	131	0.91
Non-Cytoplasmic	132	139	0.68
Transmembrane Helix	140	160	0.70
Cytoplasmic	161	170	0.53
Transmembrane Helix	171	198	0.82
Non-Cytoplasmic	199	204	0.45
Transmembrane Helix	205	229	0.79
Cytoplasmic	230	236	0.57
Transmembrane Helix	237	261	0.75
Non-Cytoplasmic	262	281	0.69
Transmembrane Helix	282	306	0.84
Cytoplasmic	307	313	0.66
Transmembrane Helix	314	333	0.71
Non-Cytoplasmic	334	337	0.62
Transmembrane Helix	338	355	0.88
Cytoplasmic	356	370	0.79
Transmembrane Helix	371	393	0.87
Non-Cytoplasmic	394	399	0.82
Transmembrane Helix	400	423	0.89
Cytoplasmic	424	438	0.87
Transmembrane Helix	439	458	0.94
Non-Cytoplasmic	459	471	0.73
Transmembrane Helix	472	498	0.86
Cytoplasmic	499	655	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFALKTALS ICIFLLIFQT VDSDSSDSSA SASVVSGAVK SEDTVVAVNK TDVLGEAIDA  60
   61 NATSLEQHGA AIVGNVSEEK KRSLAIFFIL FVIMLATLVV HMLIVSKIHW MPESLAIVAL 120
  121 GALIGSILSY SRRDWSEIEA LSPDVFFLVL LPPIIFENAY NLNKGYFFSN FVPILTFAIF 180
  181 GTTISAMVIG AGLYILGAIG LIFEFTFFEC FAFAAMISAV DPVGTLAIFQ AVKVESLLYM 240
  241 LVFGESMLND AVSIVLAATA LRHAKPSFNS LPASEIITSA FVTFTEMFFF SACLGVGIGL 300
  301 LSALLFKHVD LRKTPSLEFA LLLIFSYIPY GFAEALDLSG IMAILFCGIS MSQFTRHNVS 360
  361 PIAQITFRHT FRTISFVAET STFAYIGMAF FTIKLNFAPW LIFWSVVLCL LGRACNVFPL 420
  421 AYLVNQCRKD VQISMKNQII MWFSGMRGAV CFALVLYMDL DKEKKSILLT TVLFLILFTT 480
  481 IFLGGSALPF ISFINRCYPN ERQRKRRRTP RNKESTGNSS ALMMSKTQEM SFFGSDDWGP 540
  541 KKSALDATSS AGRIMRQLFV RKFTAIERLE NRDKLAALTK RALASDQMTD SDDVEFGGGG 600
  601 GVGGGGRMKD DVTPTRGRSG SRNSSDVIIS AGGGGVSGEH HLLISSGSDS STNEF