YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pdfr-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADATSPFNV SILDNSTKLS EMVESGWNVL ASTSVQAFNE AMDVLEESYP LCKKMLDHNN  60
   61 LFPERDPNDT RIWCNATYDT VLCWPPTPAN SSVTLQCPHM KGLDPNKNIT KDCHVSGVWS 120
  121 GRNAGEMGPT LPGWTNFTMC YTDEVIYIMQ NLNNESLTIA QEVARNARKL EFVGLGLSLV 180
  181 SLILAISIFS YFRRLRVFRN LLHLHLMIAM LMVVILRLVL YIDLIFTGEN GPHTNSAEGK 240
  241 TINTMPIVCE GMFFFLEYFK TVTFCWMFLE GIYLNNQIVF GFFNSEPKLL PYFIAGYGIP 300
  301 LVHTMLWLLV VLIKKDFKVE RCLGSYYLEP EFWILDGPRM AELVINLFFI CNVIRVLYSK 360
  361 VRESNNTSEA GLKKSVKAAM MLLPLLGVPN IMQTIPFAPT RDNIMVFAVW TYTASFTYMY 420
  421 QGLMVASIYC FTNKEVNHVL KTFYARYRLL HKSQNELRRG SRSVASHYAA KNGTANASAP 480
  481 QTNNADEFGK LSPFPSRSKK GSDDSTTKLM KDAVMEEEKN ANNNGYGSAG EMTPLREGSN 540
  541 RSTKSP

Type	Start	End	Confidence
Non-Cytoplasmic	1	171	0.61
Transmembrane Helix	172	192	0.94
Cytoplasmic	193	200	0.58
Transmembrane Helix	201	222	0.91
Non-Cytoplasmic	223	288	0.48
Transmembrane Helix	289	311	0.88
Cytoplasmic	312	377	0.61
Transmembrane Helix	378	397	0.83
Non-Cytoplasmic	398	407	0.75
Transmembrane Helix	408	431	0.73
Cytoplasmic	432	546	0.90