YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.93
Transmembrane Helix	37	58	0.85
Non-Cytoplasmic	59	67	0.84
Transmembrane Helix	68	91	0.89
Cytoplasmic	92	110	0.85
Transmembrane Helix	111	136	0.91
Non-Cytoplasmic	137	207	0.97
Transmembrane Helix	208	228	0.92
Cytoplasmic	229	236	0.88
Transmembrane Helix	237	259	0.92
Non-Cytoplasmic	260	289	0.94
Transmembrane Helix	290	308	0.94
Cytoplasmic	309	318	0.82
Transmembrane Helix	319	341	0.89
Non-Cytoplasmic	342	377	0.92
Transmembrane Helix	378	399	0.86
Cytoplasmic	400	419	0.89
Transmembrane Helix	420	441	0.90
Non-Cytoplasmic	442	451	0.84
Transmembrane Helix	452	474	0.92
Cytoplasmic	475	494	0.95
Transmembrane Helix	495	517	0.95
Non-Cytoplasmic	518	533	0.91
Transmembrane Helix	534	556	0.95
Cytoplasmic	557	600	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSEHVPLP TDEAKAKELE QSQHSEEPDR GQWTGKFDFL MSMVAYAVGL GNVWRFPYLC  60
   61 YKNGGGSFLV VYMIFFCLAA VPIFLMEVTV GQYLQKGAME MWLMCPLFRG VGIGNVVIAF 120
  121 MCIAYFCVIV AWAMFYMISS IAWVFPWETC NNYWNDATCV TGKENFTELA RIKALVASAG 180
  181 GHTQTSVEQF WEKRVLHDTG DISEFGGIQW ELFFIMAAAW LIVYFALWKG ITQARKFVYF 240
  241 CALFPYVLIF ILLIRGLTLE GAGTGIYFYL KPNATRLLDT AVWKDAGTQV FYSYGVGFGA 300
  301 LIALGSHNKF NHNCFKDAIT MCFINGCTSI TAGFAVFSIL GYMSHVAQKD ISEIVKPGVG 360
  361 LAFLAYPEVA SNLPMKQVFA VLFFLMITIL GLDSQVCMME GLFTALEDAF PILRKYKKQS 420
  421 LGIFCLFFFC IGIPMVTHSG SHWLTLFDAY GASGYALLFV VFFEVVGLAY GFGAHNIRKA 480
  481 LHEMIGVTLP KGIEYVWKFC APATSLVLFV FCVVYYHPVK YPDGKDFPFW ANAFGWFLSS 540
  541 CSMVVIPGYA IYYLFFTNKH LTLKERVRKG LNLDGSFESP AKKNLVNNAE ELKFIESSSQ 600
  601