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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clp-1
Protein type: Transmembrane
Type Confidence: 0.79
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDEEEIIQ KVEVKPDEFN GLIGSIAGNL IRDKVGGAGG DILGGLASNF FGGGGGGGGG  60
   61 GGGGGFGGGN GGFGGGGGGS GGGGGGNNIG SLVGSLIGGG GGGGNYGGGG GNQGGGGGGG 120
  121 FNFNDIGGLI NSMGGGGGGG QRQGGGGGGF GDILGGIGSL IGGGGGGQYN GGGGNVNPNN 180
  181 LNGGMVNVIG NLIGEAAHRF LGVDPGTGRI IGAVAGNVIM GLGGKDNSLG NIGKVILDNI 240
  241 ISGKFRRDVD PFVRPGPDPD RGGGGSGPSP ISPRPTTEPQ DFYELRDQCL ESKRLFEDPQ 300
  301 FLANDSSLFF SKRPPKRVEW LRPGEITREP QLITEGHSRF DVIQGELGDC WLLAAAANLT 360
  361 LKDELFYRVV PPDQSFTENY AGIFHFQFWQ YGKWVDVVID DRLPTSNGEL LYMHSASNNE 420
  421 FWSALLEKAY AKLFGSYEAL KGGTTSEALE DMTGGLTEFI DLKNPPRNLM QMMMRGFEMG 480
  481 SLFGCSIEAD PNVWEAKMSN GLVKGHAYSI TGCRIVDGPN GQTCILRIRN PWGNEQEWNG 540
  541 PWSDNSREWR SVPDSVKQDM GLKFDHDGEF WMSFDDFMRN FEKMEICNLG PDVMDEVYQM 600
  601 TGVKAAGMVW AANTHDGAWV RNQTAGGCRN YINTFANNPQ FRVQLTDSDP DDDDELCTVI 660
  661 FAVLQKYRRN LKQDGLDNVP IGFAVYDAGN NRGRLSKQFF AANKSAMRSA AFINLREMTG 720
  721 RFRVPPGNYV VVPSTFEPNE EAEFMLRVYT NGFIESEEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle