YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sid-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.52
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	313	0.99
Transmembrane Helix	314	337	0.89
Cytoplasmic	338	429	0.96
Transmembrane Helix	430	447	0.93
Non-Cytoplasmic	448	482	0.92
Transmembrane Helix	483	502	0.91
Cytoplasmic	503	517	0.78
Transmembrane Helix	518	539	0.84
Non-Cytoplasmic	540	546	0.79
Transmembrane Helix	547	569	0.85
Cytoplasmic	570	576	0.90
Transmembrane Helix	577	596	0.93
Non-Cytoplasmic	597	600	0.84
Transmembrane Helix	601	620	0.92
Cytoplasmic	621	633	0.82
Transmembrane Helix	634	653	0.96
Non-Cytoplasmic	654	659	0.80
Transmembrane Helix	660	680	0.92
Cytoplasmic	681	691	0.85
Transmembrane Helix	692	711	0.94
Non-Cytoplasmic	712	741	0.97
Transmembrane Helix	742	761	0.96
Cytoplasmic	762	776	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRVYLIILM HLVIGLTQNN STTPSPIITS SNSSVLVFEI SSKMKMIEKK LEANTVHVLR  60
   61 LELDQSFILD LTKVAAEIVD SSKYSKEDGV ILEVTVSNGR DSFLLKLPTV YPNLKLYTDG 120
  121 KLLNPLVEQD FGAHRKRHRI GDPHFHQNLI VTVQSRLNAD IDYRLHVTHL DRAQYDFLKF 180
  181 KTGQTTKTLS NQKLTFVKPI GFFLNCSEQN ISQFHVTLYS EDDICANLIT VPANESIYDR 240
  241 SVISDKTHNR RVLSFTKRAD IFFTETEISM FKSFRIFVFI APDDSGCSTN TSRKSFNEKK 300
  301 KISFEFKKLE NQSYAVPTAL MMIFLTTPCL LFLPIVINII KNSRKLAPSQ SNLISFSPVP 360
  361 SEQRDMDLSH DEQQNTSSEL ENNGEIPAAE NQIVEEITAE NQETSVEEGN REIQVKIPLK 420
  421 QDSLSLHGQM LQYPVAIILP VLMHTAIEFH KWTTSTMANR DEMCFHNHAC ARPLGELRAW 480
  481 NNIITNIGYT LYGAIFIVLS ICRRGRHEYS HVFGTYECTL LDVTIGVFMV LQSIASATYH 540
  541 ICPSDVAFQF DTPCIQVICG LLMVRQWFVR HESPSPAYTN ILLVGVVSLN FLISAFSKTS 600
  601 YVRFIIAVIH VIVVGSICLA KERSLGSEKL KTRFFIMAFS MGNFAAIVMY LTLSAFHLNQ 660
  661 IATYCFIINC IMYLMYYGCM KVLHSERITS KAKLCGALSL LAWAVAGFFF FQDDTDWTRS 720
  721 AAASRALNKP CLLLGFFGSH DLWHIFGALA GLFTFIFVSF VDDDLINTRK TSINIF