YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cup-4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.43
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIIFVCFI LIFYLPIQKK HVNSQQQGID SDDGDAESFF NKSYSEHQSA LEQKIFRGYN  60
   61 PKNRPMKNAS FPTIVDVHWH IIHVSINQRE QTMTVHGHIY MRWFDEFLVW DPKDFNNIQY 120
  121 ARVKKWQVWQ PKIKVSNSAS GLGSAFDFST SAHVIIQMMG KDRAKVEMYP TFSIKVGCAF 180
  181 DFTDYPYDLN KCAINLFSTS TMADVQLQNL YAIPPTLSFG WEEQKMKRII SDFKIQNVSS 240
  241 SALYYTNGNI TSSAPITGFD LGSTWSMLAV TVSFVRHSPL FEAAVVTPCI VVASLISMTF 300
  301 FIDSLSSTFL LMMLHFYVQL IFLHDLVEKL PLSVSEIPFC IKLIGILMYT NGLTLVLHSS 360
  361 LLCGSYYKCP VPQQLNKIFV IEEYIPNTFK EKVQIKKEES NKSWRDLMKL IRPIIGFVLI 420
  421 ILLICMFFVC LLL

Type	Start	End	Confidence
Signal Peptide	1	19	0.43
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	255	0.73
Transmembrane Helix	256	275	0.46
Cytoplasmic	276	282	0.43
Transmembrane Helix	283	317	0.72
Non-Cytoplasmic	318	338	0.40
Transmembrane Helix	339	358	0.61
Cytoplasmic	359	409	0.70
Transmembrane Helix	410	432	0.91
Non-Cytoplasmic	433	433	0.75