YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.84
Transmembrane Helix	31	52	0.86
Non-Cytoplasmic	53	61	0.63
Transmembrane Helix	62	81	0.94
Cytoplasmic	82	91	0.75
Transmembrane Helix	92	111	0.83
Non-Cytoplasmic	112	120	0.63
Transmembrane Helix	121	145	0.86
Cytoplasmic	146	154	0.60
Transmembrane Helix	155	177	0.77
Non-Cytoplasmic	178	184	0.67
Transmembrane Helix	185	209	0.74
Cytoplasmic	210	226	0.63
Transmembrane Helix	227	248	0.91
Non-Cytoplasmic	249	273	0.63
Transmembrane Helix	274	297	0.83
Cytoplasmic	298	316	0.81
Transmembrane Helix	317	338	0.83
Non-Cytoplasmic	339	347	0.80
Transmembrane Helix	348	371	0.92
Cytoplasmic	372	384	0.90
Transmembrane Helix	385	405	0.87
Non-Cytoplasmic	406	412	0.70
Transmembrane Helix	413	433	0.88
Cytoplasmic	434	627	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYVGAECEE EEKEYPSRYP IAYFEWENVK IPMTICLWLI GASIAKIIFN LIPHLNELFP  60
   61 DSALLIMIGL IIGIIFKLIG VNKNAFFLES EVFMLYLLPP LVFDAGYFMP ARQFFDNFGS 120
  121 ILCFAMIGTS FNIVAIALSL WAISLTGLFS VETPLMHMLL FGSVAADVDP VAVIVIFEEL 180
  181 KVNEVLFIAV FGESLLNDGV AVVLYRMFLT FSEIGTENLI TSDYINGGVS FLVVAFGGIG 240
  241 IGLLFAFLTS LVTRFARDEE VKVLNSVFIL ILPYTCYLCG ELFGLSSIMA IVFCGAAMRQ 300
  301 YCRENVDPDT VKATESFIKV LSLASETVIF VFLGLSTVSS NHHWDTSFIV LTVVFCLIYR 360
  361 TLGVVVMCYF LNKYRLNKYT KVDQFIMAYG GLRGAIAYGL VVAIPDFIPG KNMFVTSCII 420
  421 VIYFTVFLQG ITLKPIAEFL QVEKKNVHSK NMIEHIYSEL IDTTMAGMED IAGFKGHHWI 480
  481 RDSWNALNNN YLRPILVNKN NMKEMDKTKL VRKYKHLVDE DAKKIARGDL NSNMVFTKAL 540
  541 IEHTRSRTNT MIDGVSSTSK IDFTKHMKEN FGVTVYDDHS TVPMTPTHLF QETTEVEYSV 600
  601 RSEINDNDGF ENDGYESDES GSFHERV