YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	clh-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	124	0.95
Non-Cytoplasmic	125	160	0.94
Transmembrane Helix	161	183	0.89
Cytoplasmic	184	208	0.89
Transmembrane Helix	209	228	0.59
Non-Cytoplasmic	229	270	0.55
Transmembrane Helix	271	295	0.83
Cytoplasmic	296	304	0.61
Transmembrane Helix	305	327	0.87
Non-Cytoplasmic	328	355	0.67
Transmembrane Helix	356	376	0.95
Cytoplasmic	377	394	0.90
Transmembrane Helix	395	416	0.93
Non-Cytoplasmic	417	465	0.93
Transmembrane Helix	466	489	0.75
Cytoplasmic	490	490	0.49
Transmembrane Helix	491	514	0.79
Non-Cytoplasmic	515	531	0.77
Transmembrane Helix	532	554	0.58
Cytoplasmic	555	560	0.57
Transmembrane Helix	561	578	0.38
Non-Cytoplasmic	579	796	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRNRVRTS SNSLDPNEDP VSGLERVMSN SNLEHVARQR RRLEEELLFS RQLDDVGRTD  60
   61 SHEALSARYE SLNYEISENR LYRDAEKKPS HQLTLWRISR NRWFVCFLIG VFTGLVAAFI 120
  121 DIMVHYSKDI KFNWILKYLL SKCGEEQRGT TAGCMWTVMI AWIGYNCVLV TIAAILVIYV 180
  181 APIAGGSGIP QIKCYLNGIA IPEVVRLKTL VSKAVGVACS VGGGLCAGKE GPMIHSGAAV 240
  241 GAGISQGKSY SLGIDFGLFR EFRNDREKRD FVSAGAAAGV AAAFGAPIGG VLFSLEEGAS 300
  301 FWNQALTWRM FFSAMISSFT VNWILSWFNG RSGWLSWTGL ANFGVFENKD YNIWEIPLFL 360
  361 LIGIIGGCLG ALFNYLNTKL TEFRKKYVSS KLGRLFECLL VAAVSGFLAF LTIFAIDDCQ 420
  421 PIGANPTATS TQINQMWCKK GEYSAVASLF FQNPEESVKS MFHSPINSFG VTTLVIFGIE 480
  481 YFLLTLWTFG ISVPSGVFIP AILTGAAWGR LFGIFVERLF PSVTGIDPGK YALAGAAAQL 540
  541 GGVVRMTISL TAIIMEATKD ITFGLPIMLV LMVTKWVGDM FNEGLYDAHI DLAEVPILGW 600
  601 NPPKMSRNIL ADRVMRKDVV ALERRERVSR IVEILRSTLH HGFPVVDRIE ESPYESLPDY 660
  661 GRLKGYILRS QLFKLLENRI FEEEGASNSA LPNDFYECQD DDDQMKSVAE LGLTNFDESC 720
  721 FLDIEPYMHP HPHRVPLNTS LPFIFRLFRG LGLRYLFVVN DDNHLRGVIT RKDVARFRER 780
  781 RRNREYHVDE LYISES