YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pept-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.75
Transmembrane Helix	48	65	0.69
Non-Cytoplasmic	66	71	0.69
Transmembrane Helix	72	92	0.88
Cytoplasmic	93	98	0.80
Transmembrane Helix	99	122	0.88
Non-Cytoplasmic	123	130	0.80
Transmembrane Helix	131	152	0.87
Cytoplasmic	153	166	0.81
Transmembrane Helix	167	188	0.91
Non-Cytoplasmic	189	206	0.85
Transmembrane Helix	207	229	0.91
Cytoplasmic	230	299	0.98
Transmembrane Helix	300	317	0.97
Non-Cytoplasmic	318	345	0.93
Transmembrane Helix	346	365	0.94
Cytoplasmic	366	380	0.84
Transmembrane Helix	381	402	0.91
Non-Cytoplasmic	403	676	0.78
Transmembrane Helix	677	696	0.59
Cytoplasmic	697	708	0.44
Transmembrane Helix	709	731	0.91
Non-Cytoplasmic	732	737	0.41
Transmembrane Helix	738	760	0.92
Cytoplasmic	761	785	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASHLHDDP RPGSPVDHQP TTWGGIIKKW PKQTFLIVGN ELCERFSFYG MRAVLTLYFF  60
   61 NILNFSQSFS TVLFHAFTVI CYSSPLLGSI LADGYIGKFW TIFFISIFYA CGQILLAFSS 120
  121 IAPSGSSHHP LLDLLGLLIV GLGTGGIKPC VSAFGGDQFP AHYTRMISLF FSMFYFSINA 180
  181 GSLISMWLTP YFRSMSCFGH DSCYPLAFGI PAILMIVATL VFMAGSFWYK KVPPKENIIF 240
  241 KVIGTITTAL RKKASSSSTH QRSHWLEYSL DGHDCALSTE CKNLHGNCAQ RRYIEDIKRL 300
  301 FRVIVMMIPV PMFWALYDQQ GSTWVLQAVG MDAKVFGFEI LPDQMGVLNA FLILFFIPIF 360
  361 QSIVYPTIEK LGFQMTMLRK MAGGGILTAV SFFVCGIVQL FVNPTLPYIP MANEAHLTII 420
  421 NTIPSCDFNV LIDSREPFDL LRKSGIAPDD SVRKPISFTG DDFFQPNITF DNLAPNCPKF 480
  481 TAEPMLAPAT SYVLTLSPNG WAYNAVRPEK PKSGKGELSM GLNLIVPCDK IPSNVTWEQC 540
  541 NGTEGYSGAI ALCKVESDVI TDNNNVCDPT AKGKFYVLSN ANPLDVHDFS KKSTVTAFGR 600
  601 TYSPIEMKPG TYRLFYTDDS RTHFTPLNLP PVQQDHMGGQ YLITVSTRSK NDSEVLATTE 660
  661 SLVSYNRVSI LWQIPQYVIL TAGEVLFSIT GLEFAYTEAS PQLKSVVQAL WLFTTAIGDL 720
  721 IVVVIFMLNI FSDVAVQMFV FGGIMLFVIF VFILLAVFYY EYADYSNESE VLTEKMIVDD 780
  781 DHTRI