YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYKISYLLS ISILLFFAKC EKVKNKAVEK KDDRNERELA KHLLDDYYQY TRPVRNYSSV  60
   61 LNVTVQPQIY NLVEVNEQNE QIKILLWFPQ SWKDDYLTWD PKEWNGIERI IIPKSQIWIP 120
  121 DGYIFNTVEE TEPLENHNAR VRYDGRVEVD FNKLVDLTCP MSVLSFPFDV QLCALQFGSW 180
  181 SYQAHAISFN VLDTFVPKKS KNSEWDIVSF NATKMTTKYG DTLGGFNVYE EIFYYLELRR 240
  241 KPLYYIVVIL LPSFLIVTVS NIGLFTPHGV HGDREEHVSL GLTTMLTMAV ILDMVTGQMP 300
  301 RSSEGIPLLG MYVLIEFVIS VIAVLVSVVI IFAHERMLYL DATPPYWVCK LFSDDCKMSL 360
  361 EEIEEDFCSK PADLVQELRF CMEEIKRYLD EQDSTEKNRI IWQRFFSWTD IIFSIFFFVV 420
  421 NCLVTFYMFM EFMF

Type	Start	End	Confidence
Signal Peptide	1	20	0.80
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	242	0.87
Transmembrane Helix	243	265	0.93
Cytoplasmic	266	276	0.77
Transmembrane Helix	277	297	0.88
Non-Cytoplasmic	298	308	0.77
Transmembrane Helix	309	333	0.88
Cytoplasmic	334	405	0.88
Transmembrane Helix	406	429	0.90
Non-Cytoplasmic	430	434	0.79