YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-49
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPFTLIVL LSAHLCLHVV VTQDEDSHIN TQLLSSVLDR LTNRTTYDKR LRPRYGEKPV  60
   61 DVGITIHVSS ISAVSEVDMD FTLDFYMRQT WQDPRLAFGS LDLGLSKEID SLTVGVDYLD 120
  121 RLWKPDTFFP NEKKSFFHLA TTHNSFLRIE GDGTVYTSQR LTVTATCPMD LKLFPMDSQH 180
  181 CKLEIESYGY ETKDIDYYWG KKRTDLEITA VKFDTFQLPQ FQPTLYFVNT TKAETSSGKY 240
  241 VRLALEVILV RNMGFYTMNI VIPSILIVTI SWVSFWLNRE ASPARVGLGV TTVLTMTTLI 300
  301 TTTNNSMPKV SYVKGLDVFL NFCFVMVFAS LLEYAIVSYM NKRLVLRREK RRKAAEQQQR 360
  361 NEMPMFNASP KAANNNNPLM EIPENCDCRT IPMMQHPRLV TDGAHTLWPA PFARPKKASK 420
  421 TCCQRWTPAK IDKLSRYGFP LSFSIFNIVY WLYMKYLSLN SSDKIQENDK WQQIH

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	252	0.99
Transmembrane Helix	253	276	0.90
Cytoplasmic	277	283	0.86
Transmembrane Helix	284	303	0.91
Non-Cytoplasmic	304	317	0.87
Transmembrane Helix	318	340	0.90
Cytoplasmic	341	433	0.99
Transmembrane Helix	434	454	0.76
Non-Cytoplasmic	455	475	0.80