YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-29
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTSWAWKLW STLGVALRIL FIDIPMDIHR FLNLRQKSVQ GQTVIITGGG SGLGRAMALD  60
   61 FAKRKAKVAI IDVNKEGGLE TVKTIAAEGN MAKFWYCDIS DVDNMKKTAK EIEDTFGDVN 120
  121 IVICNAAILS FTSFMEISDE LLRKCLDVNI FGTINTIRAF LPKMETKNDG HIVCVCSIAG 180
  181 WSGETMGLSY CTSKFAVRGA MESLQMELRD RGLEGIKTTT LYPYFARTPM ILENNMRPTC 240
  241 TWFPFMSIRS CSKRMVDSIL KEKVHAFVPS YITLIPFVKN FCSLQVCRSL RNYLGVKYSA 300
  301 SDPSFCKLTL IEMSDYYKTP QLFWWLLIVP ALAINYISYA HPAAALNIPL IGSLVHKIGT 360
  361 EYPFVALLTN LFALVAHAGE ALYALYLCHK ANISFASTAK WVVQTFILGF PSLSILSRYE 420
  421 AKQRKNN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	26	0.68
Non-Cytoplasmic	27	38	0.54
Transmembrane Helix	39	59	0.39
Cytoplasmic	60	321	0.73
Transmembrane Helix	322	343	0.87
Non-Cytoplasmic	344	363	0.62
Transmembrane Helix	364	387	0.75
Cytoplasmic	388	397	0.52
Transmembrane Helix	398	419	0.59
Non-Cytoplasmic	420	427	0.34