YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVNISLSL ALNVTDKEPD FQSLEMLGIL YWILNLTVVE SVFYLVVAFL LFLIGRHFIE  60
   61 KLQINNLSKR AVFITGCDSG FGRGLALKCL EQGMPVFAGC LTEQGIESLS AEARKSIGNG 120
  121 RSLDAFLMDV TSDESVGEVA KRLEKKCEQY GGLHAVVNNA GITGKHIADD FLDINEYLKV 180
  181 ANINLWGPIR TTMAVKKLLK KARGRVVTVA SICARVGLPG LGPYSVSKYG VSAYCDVIRQ 240
  241 ELRPFGISVH VLEPGFFNTP LINREKIDAE ILEAWKHAPN EVKQEYGEKF FNDARESTHL 300
  301 FLNSVASSQI SLVVDAYFHA ITSKHPRSRY QIGWDSILLF IPFSYLPTGL QDYIFAAAGL 360
  361 FLPKPACR

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.63
Transmembrane Helix	31	54	0.88
Cytoplasmic	55	331	0.56
Transmembrane Helix	332	351	0.46
Non-Cytoplasmic	352	368	0.61