YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	avr-14
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHYRLTTIL LIISIIHSIR AKRKLKEQEI IQRILKDYDW RVRPRGMNAT WPDTGGPVLV  60
   61 TVNIYLRSIS KIDDVNMEYS AQFTFREEWT DQRLAYERYE ESGDTEVPPF VVLATSENAD 120
  121 QSQQIWMPDT FFQNEKEARR HLIDKPNVLI RIHKNGQILY SVRLSLVLSC PMSLEFYPLD 180
  181 RQNCLIDLAS YAYTTQDIKY EWKEKKPIQQ KDGLRQSLPS FELQDVVTDY CTSLTNTGEY 240
  241 SCARVVLRLR REYSYYLIQL YIPCIMLVVV SWVSFWLDKD AVPARVSLGV TTLLTMTTQA 300
  301 SGINSKLPPV SYIKAVDVWI GVCLAFIFGA LLEYAVVNYY GRKEFLRKEK KKKTRIDDCV 360
  361 CPSDRPPLRL DLSAYRSVKR LPIIKRISEI LSTNIDISRR VDLMSRLTFP LTFFSFLIFY 420
  421 YVAYVKQSRD

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	254	0.92
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	283	0.75
Transmembrane Helix	284	303	0.83
Non-Cytoplasmic	304	317	0.82
Transmembrane Helix	318	340	0.91
Cytoplasmic	341	406	0.94
Transmembrane Helix	407	424	0.95
Non-Cytoplasmic	425	430	0.85