YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dat-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.95
Transmembrane Helix	47	66	0.87
Non-Cytoplasmic	67	77	0.76
Transmembrane Helix	78	99	0.89
Cytoplasmic	100	120	0.77
Transmembrane Helix	121	145	0.79
Non-Cytoplasmic	146	230	0.83
Transmembrane Helix	231	249	0.92
Cytoplasmic	250	257	0.72
Transmembrane Helix	258	280	0.89
Non-Cytoplasmic	281	306	0.81
Transmembrane Helix	307	328	0.85
Cytoplasmic	329	338	0.65
Transmembrane Helix	339	361	0.88
Non-Cytoplasmic	362	396	0.78
Transmembrane Helix	397	419	0.82
Cytoplasmic	420	439	0.87
Transmembrane Helix	440	463	0.90
Non-Cytoplasmic	464	471	0.74
Transmembrane Helix	472	494	0.92
Cytoplasmic	495	512	0.94
Transmembrane Helix	513	534	0.91
Non-Cytoplasmic	535	551	0.82
Transmembrane Helix	552	574	0.88
Cytoplasmic	575	615	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLVPTDDPD EKIGRTSNGM QNATLPIDGP VNTEPKDPAR EQWSGKLDFL LSVVGFAVDL  60
   61 GNIWRFPYLC FKNGGGVFLI PYSIMVLLTG VPLFYMELCL GQYYRKGAIT TWGRICPLFK 120
  121 GIGYCVILTA FYVDFFYNVI LAWGLHYLYT SFSFNLPWAS CNNSYNSPAC YEPHWSEDGT 180
  181 AMCRSANQSV SAEKISAAEE YFYKGFLGLH EANAPNSHVI RSVTDLGNVR WDIALSLFVV 240
  241 YLICYFSMWK GIHTSGKVVW FTALFPYVVL GILFIRGVTL PGWQNGIEYY LRPNFEMLKR 300
  301 PSVWQDAATQ VFFSLGPGFG VLMAYSSYND FHNNVYVDAL FTSFINCATS FLSGFVIFSV 360
  361 LGYMSCKSGK PIEAVAQEGP GLVFVVYPEA LSTMPYAPFW SVLFFLMLMT LGLDSSFGGS 420
  421 EAIITGLSDE FPILKKNREV FVGCLFAFYM VIGIAMCTEG GILIMEWLII YGTTWGLLIA 480
  481 VFCEAMVIAY IYGLRQFVHD VKEMMGFRPG NYWKFCWSCA APFILLSMIT SNFINYQALT 540
  541 YQDYTYPTAA NVIGIIFALS GASFIPLVGI YKFVNARGNT ISEKWQRVTM PYRKRPNQTE 600
  601 YIPIPTTQPH SDIML