YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE25073
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQDNKNEI VAPSIHGKKL DRSLWRIYLK YIVIAIVLLV VLGNTIMTII LVVNDVNETG  60
   61 STPTVTSISS TVAASTYPAT PGCNKRIIGY YFATQTSVIT RDQVSKLTHA VFAFVNMTSD 120
  121 GHLQIDGDLA KNRFTNLIEI AKQQTPQVKV MISIGGNDNS NNFKPVLSSP DRKKLFINST 180
  181 VSFLQTYDID GVDLYWKWPG KTSKDIYSQF INDLRYSLQR QKRNYIMSIV LPPPDMGANY 240
  241 EAGIDIENIF DNVDFLNIFT MGYFGPWQND AGMITGAASQ LFNGVNGVPG RKTYNIHHST 300
  301 ERYVCKTGQS DKYNIAIPFY TMLWKHVKGP VNPPNIEIYR NATFQGGVVG ETSMSRKLVQ 360
  361 EEGYDFSNPT YNPEIRAAFK YNATTETFLT FETNDTIAAK IDYVKDRILG GVWIWAVDMD 420
  421 DDSNNLLNLV KFTGYCTVGN LTLYNC

Type	Start	End	Confidence
Cytoplasmic	1	27	0.98
Transmembrane Helix	28	52	0.90
Non-Cytoplasmic	53	446	0.96