YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVAQGVST ILTTFQKTFK GLLPLIILVA YTLLGAWIFW MIEGENEREM LIEQQKERDE  60
   61 LIRRTVYKIN QLQIKRQRRL MTAEEEYNRT AKVLTTFQET LGIVPADMDK DIHWTFLGSI 120
  121 FYCMTVYTTI GYGNIVPGTG WGRFATILYA FIGIPLTVLS LYCLGSLFAK GCKMLWRFFL 180
  181 KSTRVVSKDL SNKISEAADN IEEGTTAITP SAEKTENNDD DLLSFPISGL LLITVIWVIF 240
  241 CAVLFTFLEE WDFGTSLYFT LISFTTIGFG DILPSDYDFM PIVGVLLLIG LSLVSTVMTL 300
  301 IQQQIEALAS GMKDNIDQEY ARALNEARED GEVDEHVDPE EDPENNKKSF DAVISRMNWS 360
  361 KRGLYYLLPD SQKKELAKQS EKKMGRKSIK IQTDNDLLET LIREEILKAE LNNEMHKYTA 420
  421 PRSSHQPKLV YSDVREKEVP IEVVRVEHFN HGNEDYLEHD I

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.66
Transmembrane Helix	21	41	0.96
Cytoplasmic	42	111	0.68
Transmembrane Helix	112	136	0.81
Non-Cytoplasmic	137	145	0.61
Transmembrane Helix	146	169	0.91
Cytoplasmic	170	224	0.68
Transmembrane Helix	225	248	0.88
Non-Cytoplasmic	249	253	0.62
Transmembrane Helix	254	273	0.76
Cytoplasmic	274	278	0.45
Transmembrane Helix	279	301	0.89
Non-Cytoplasmic	302	461	0.52