YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mig-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	216	0.99
Transmembrane Helix	217	238	0.93
Cytoplasmic	239	249	0.81
Transmembrane Helix	250	270	0.93
Non-Cytoplasmic	271	287	0.90
Transmembrane Helix	288	318	0.68
Cytoplasmic	319	340	0.89
Transmembrane Helix	341	363	0.88
Non-Cytoplasmic	364	389	0.78
Transmembrane Helix	390	409	0.90
Cytoplasmic	410	416	0.79
Transmembrane Helix	417	437	0.94
Non-Cytoplasmic	438	459	0.88
Transmembrane Helix	460	480	0.93
Cytoplasmic	481	525	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFRGYLGV TWLLLLFVIG VDGQRCQKVD HEMCNDLPYN LTSFPNLVDE ESWKDASESI  60
   61 LTYKPLLSVV CSEQLKFFLC SVYFPMCNEK LANPIGPCRP LCLSVQEKCL PVLESFGFKW 120
  121 PDVIRCDKFP LENNREKMCM KGPNEQGAIQ DERAKFAAKE SEDDGNDRVE DIQREVDRLN 180
  181 GKCPQDEVFL NRSSKCVPLC SNPQKVGQTD RESATRLLLF LSLSSVILTI LSVFIVGLSR 240
  241 LEMLHSLTET AMFFSCISFC ATSVIYIVSI SFKDQFQISC TDYTHHLLFV VGGLSHVPCS 300
  301 SVASLIYYTA TCSRLWWLLI CVSWNKATRT SHILDDSRTR VIMLILGIPL APLMLALLAK 360
  361 AVAANPLTGL CFIGAASPGT DWIFNFCREL ILFLISSIAL SSACCRLLGS DEQDVNGFAG 420
  421 VIAAVYPIAG LFYMLSFVND ATQPFLSLDR SFNAVSATKF SFDLLLSFIM CAFCLIYLLF 480
  481 KLTRSSSKVS KEGYQPAVPK LPQPAIPGSV RSNTYASTFR TNNMI