YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hmit-1.2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.97
Transmembrane Helix	22	42	0.95
Non-Cytoplasmic	43	65	0.91
Transmembrane Helix	66	88	0.88
Cytoplasmic	89	97	0.88
Transmembrane Helix	98	118	0.95
Non-Cytoplasmic	119	123	0.77
Transmembrane Helix	124	145	0.92
Cytoplasmic	146	154	0.85
Transmembrane Helix	155	178	0.87
Non-Cytoplasmic	179	185	0.87
Transmembrane Helix	186	209	0.88
Cytoplasmic	210	276	0.98
Transmembrane Helix	277	296	0.83
Non-Cytoplasmic	297	316	0.78
Transmembrane Helix	317	340	0.92
Cytoplasmic	341	347	0.93
Transmembrane Helix	348	370	0.94
Non-Cytoplasmic	371	471	0.95
Transmembrane Helix	472	497	0.83
Cytoplasmic	498	509	0.80
Transmembrane Helix	510	532	0.83
Non-Cytoplasmic	533	540	0.69
Transmembrane Helix	541	560	0.94
Cytoplasmic	561	613	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVEFKVSE SGRPRPEKNP KLGFFVYLLG SAAIIGGFLF GYDTSVVSAA MLYVPEAPGL  60
   61 KPMGTVWKEV IVSITPGMAA VGAWFSGAGS DRYGRKPIII GSTLIFVCGA VICAVAWTKI 120
  121 VMLIGRIFLG VGIGFASMVV PVYLGEASPT HVRGTLVSAF AMMISFGQVV ANIMGGVFSY 180
  181 WEPYTIGWRL MFAFAGIPAL IQFVCFIFLP ETPRWLYENG HTEQAEQVLE KIYGGNTEWI 240
  241 EYELAEIKTY AEERQKQMEE EKKSGPVIWR ILKTPHVLKA CFIGSMLQAF QQLAGINTIL 300
  301 YYTADIIRSA GIENYHTIIW ISVILSICNL IGPFAPMFFI EKLGRRKLFL FSCAGVVVSL 360
  361 VLIGVSFLLV GNDSAPNFDR SAYLLAGNYQ SNGEAESCLM LSNCDSCVTS EHCGFCEDSE 420
  421 TRTGFCLPVD HNDVTLYSST GLCTNGLDKS NSSFPNATSY VWQKHHCTTS YTILPIVMMG 480
  481 VYLLTFSCGF TSLPWVLNSE FYPMWARSTC VSISTLSNWV FNLIIALTYL SLTHAITKYG 540
  541 AFWLYAIFTI IAFIFIYFLV PETTGYSIDE VEMLFMNKRQ RNIAMQARQA KLDAASDKDK 600
  601 NSSTSLSTET ITM