YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-25A5
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILIISTIF FTIITFISYI IWRRHSIFKL RSSIGIPGPP GYCKVMKFYS KNNFSLYCGT  60
   61 QLHITVSEEE DIKEIFIQNF SNFSDRMTPN IFGMNQLNQS LLQNTYATGW KHTRSAVAPI 120
  121 FSTGKMKAMH ETLVSKIDIF LEVLKEKSSS GQKWDIFDNF QSLSLDIIGK CAFAIDSNCQ 180
  181 RDRIDLFYVQ ARKFVGAVAL KKSWILPVSL ILPELSWLWR FLYKFSDLSA AELPLVKGLV 240
  241 DLYDRRRAGE GGNDSTDLLN LLIRRETIGK MTKREVIENC FAFLIAGYET TSTAMMFSAY 300
  301 LLAEYPIVQQ KLYEEIKKTK ESAGLNYDSI HNMKYSDCVY KESLRFYPPT THFTNRVCLN 360
  361 DMTIQGQIYP KDSTLKVQPH TIHRNPANWE SPDEFQPERF ENWEEKSSSL KWIPFGVGPR 420
  421 YCVGMRFAEM EFKTTIAKLL DTFELSLVPG DPPMIPETNG VIFRPRCPVR LNLKLRI

Type	Start	End	Confidence
Cytoplasmic	1	3	0.40
Transmembrane Helix	4	23	0.89
Non-Cytoplasmic	24	477	0.66