YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ivd-1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALASKLFA KCAAGGRALQ SQAVRQFSAY PIDDSMFGLN DEEIALRQSI RQFADKELAP  60
   61 YADKIDKDNG WDQLRPFWKK LGDQGLLGIT APAEYGGSGM NYFSHVIAME ELSRAAGGIA 120
  121 LSYGAHSNLC INQIVRNGSE EQRKKYLPKL ISGEHMGALA MSEAQAGSDV VSMKLRAEKK 180
  181 GDKYVLNGTK FWITNGPDAD VLVVYAKTDP SKHQHGITCF LVEKNTPGFS QSPKLDKLGM 240
  241 RGSNTCELVF DNCEIHESQI MGGKGKGVYV LMTGLDYERL VLSGGPLGLM QAACDIAFDY 300
  301 AHQRTAFGQK IGSFQLLQGK LADMYTTLNA SRSYLYMVAK AADKGNVSNK DCAGVILYVA 360
  361 EKCTQVCLDA IQILGGNGYI NDYPAGRLLR DAKLYEIGAG TSEVRRLIIG RALNKEYSN

Type	Start	End	Confidence
Signal Peptide	1	23	0.57
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	419	0.99