YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-42
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWNLVAVNY ERYHLHHLVK IGVLIVYSFL GAGLFVLCEA ENEKSLKHED NMRVLRTSIA  60
   61 AKQVFVQRLQ NMYSGNGSSS EFSETKLRRV LSEYDAAMGI SIDSKMKTRW DIWGGLYYAG 120
  121 TIYTTIGYGD LAAETIWGRI CTMLYAMIGI PIVINILNDW GNMLFYFVDH FWQNIGRQWI 180
  181 QSLRQKLRRR KVQSLEEGSI DKTPLMETSS TPPSPQNPNG TRPIPLLLVL IVLFFWMIQC 240
  241 VAYFAYFENW TLFESVYFFF ISMTTIGFGD FTPSHTVAVG GIVFILGGLS VVSMCINVIQ 300
  301 MQLEFIFNQI VQRIENDFKN TLSVAAEESR KKSIGVSEFG SIDPSKKKTM RTDGNVAEKY 360
  361 SENMEMGNKL LMRFMSNHQK KMLNEKFDER AKMRNSGTQT TSQIKVASVQ TAERYEQTWD 420
  421 EDPEEEQPKS RINTRRLYIY NTGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.86
Transmembrane Helix	17	38	0.90
Cytoplasmic	39	111	0.93
Transmembrane Helix	112	129	0.62
Non-Cytoplasmic	130	135	0.45
Transmembrane Helix	136	158	0.81
Cytoplasmic	159	223	0.63
Transmembrane Helix	224	247	0.88
Non-Cytoplasmic	248	276	0.34
Transmembrane Helix	277	299	0.89
Cytoplasmic	300	444	0.55