YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-13A12
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIIFLAILT SIIGVLSFYL WTWSYWKRRG IAGPSGYPIL GSALEMLSSE NPPYLQLKEW  60
   61 TKQYGKVYGI TEGLSRTLVI SDPDLVQEVF VKQYDNFFGR KLNPIQGDPN KDKRVNLFSS 120
  121 QGHRWKRLRT ISSPTFSNNS LRKLKTTVEE CAVELLRHIE QHTDGGQPID LLDFYQEFTL 180
  181 DVIGRIAMGQ TDSQMFKNPL LPYVRAVFGE PRKGLFLSGS LAPWIGPILR MVMFSLPNIV 240
  241 KNPAVHVIRH TSNAVEQRVK LRMADEKAGI DPGEPQDFID LFLDAKSDDV ELENNEDFTK 300
  301 AGVKVTRQLT TEEIVGQCFV FLIAGFDTTA LSLSYSSFLL ATHPKVQKKL QEEIDRECAD 360
  361 PEVTFDQLSK LKYMECVIKE TLRMYPLGAL ANSRCCMRAT KIGNYEIDEG TNILCDTWTL 420
  421 HSDKSIWGED AEEFKPERWE SGDEHFYQKG GYIPFGLGPR QCIGMRLAYM EEKLLLSHIL 480
  481 RKYTLEVCNK TQIPLKLIGS RTTQPESVWL NLTPRDDN

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.53
Transmembrane Helix	5	25	0.68
Cytoplasmic	26	214	0.53
Transmembrane Helix	215	233	0.38
Non-Cytoplasmic	234	518	0.82