YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13277
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENNTLIIT GGVVVVSSIA IYIYLKATNT CPFSLCKKSK KRTLVDDSVK YPLPLIEKFE  60
   61 ISHDTRKFRF GLPSKDHILG LPIGQHVYLT ANIDGKIIVR PYTPVSSDED LGFVDLMVKV 120
  121 YFKNTNEKFP EGGKMSQHLE SLKIGDTINF RGPQGNIVYK GHGLFSIKAD KKAEPKNRVF 180
  181 KHLSMIAGGT GITPMLQVIA AILRDPTDTT QIRLLFANQT EDDILCRQEL DDLAKEHPTR 240
  241 FRVWYTVDRP PVMWSYSSGF INDSMIKENL FPPGDDSAVL LCGPPPMINF ACIPNLEKLE 300
  301 YDPANRLLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.57
Transmembrane Helix	7	25	0.75
Cytoplasmic	26	181	0.53
Transmembrane Helix	182	201	0.42
Non-Cytoplasmic	202	309	0.88