YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13275
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENNTLAIT GGVVLISSVS LFLYLRQLRA EKKSKRTLED DSVKYLLPLI EKFEISHNTR  60
   61 KFRFGLPSKD HILGLPIGHH VYLSANIGGK LIVRSYTPVS CDLDLGYVDL MVKVYFKNTH 120
  121 ERFPDGGKMS QHLESLKIGD TVSFRGPHGS IIYKGSGLFT VRMDKKAEPK NRFFKHLSMI 180
  181 AGGTGITPML QVIAAILRDP IDATQIRLLF ANQTEDDILC RKELDELAEK HPTRFRVWYT 240
  241 VSKASKDWRY STGHINEEMI KEHLFPSNEE SAVLLCGPPA MINCACIPNL DKLGHNSENY 300
  301 LIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.88
Transmembrane Helix	7	26	0.93
Cytoplasmic	27	172	0.94
Transmembrane Helix	173	197	0.69
Non-Cytoplasmic	198	303	0.83