YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE12896
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQISGINAA SPEKNNSKLA DVSLQQFLAN VDEIRHVLTT LSADRHAIYM EQVESLAAGC  60
   61 SDTAKCRKLN DHVDKFIAQA RGIRRRLADA SEELVQYPES RVGSGRARHE QIQMLIVSLE 120
  121 GIMSQFADDQ ASYKAEAAKK IAAYLRKQNI EVTDSEIDGA IENGSLFQLT RNINLGVAQK 180
  181 KALFDDMKNR ATDIMILEKQ IREVEELFVD MQLLVQSQGE TVDRIETSVI RAEEYAEQAQ 240
  241 QNVRQAVVLR RKNRKWKIVT CIALIVLLLV VVYLLSHFLG AIIPGWK

Type	Start	End	Confidence
Cytoplasmic	1	257	0.99
Transmembrane Helix	258	281	0.90
Non-Cytoplasmic	282	287	0.89