YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fpn-1.2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.93
Transmembrane Helix	127	150	0.86
Non-Cytoplasmic	151	156	0.76
Transmembrane Helix	157	177	0.95
Cytoplasmic	178	205	0.81
Transmembrane Helix	206	227	0.59
Non-Cytoplasmic	228	232	0.54
Transmembrane Helix	233	251	0.74
Cytoplasmic	252	286	0.91
Transmembrane Helix	287	309	0.87
Non-Cytoplasmic	310	327	0.84
Transmembrane Helix	328	349	0.92
Cytoplasmic	350	358	0.89
Transmembrane Helix	359	381	0.83
Non-Cytoplasmic	382	427	0.88
Transmembrane Helix	428	448	0.93
Cytoplasmic	449	486	0.75
Transmembrane Helix	487	517	0.74
Non-Cytoplasmic	518	551	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTNTLLNFL PVITEYIEVI ANMEISKCVA GDGSAEISSL IPVTMTFQQP NNRRNSGTLS  60
   61 KTSIFLYCAY ISTCLEDRAW SFCVSLCMDL MGGMRVVSIE QLFEGVLQMF LSGYLGKHFD 120
  121 GLSRKRAIMT VVPLNNLSIC AAAALIITCL SIDATSPWYI VCLVLAMCIC AVNRLFLNAE 180
  181 KFITGRDWVM VLGNDGTLSN MNATLLTLDQ CTNVIAPLVT GALVTWVGLR ETVGIFGIAS 240
  241 LVSMASKTIF LRAIYISNPL LQVKKDKKDE ALDPFANSRL KESVVYTYWC QISFPAAFGM 300
  301 SLLFMTVMGF DGLAVGYGSS VGLPEFVIGA FRSYGSVTAI LGAFSYAFFE KRYSVATSGL 360
  361 LGLVVQQFFA VLAVISVFLP GSPMNLGGYF GNFTMGTWWH DMVHSFDGNN ATNLDPHVDW 420
  421 KHFSSDGVSL ASIFVFLIAI ASARYGLWCL DLAITHIMQV TIPERERNTV FGMHNALCQT 480
  481 FSVLKDVLVI ILPLPATFAI CIFISYGFVS CGHMFFIYYL VKTNSLSTVG RKLSQLPEKE 540
  541 EKEEKEEFER L