YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.95
Transmembrane Helix	77	98	0.75
Non-Cytoplasmic	99	113	0.70
Transmembrane Helix	114	135	0.75
Cytoplasmic	136	142	0.65
Transmembrane Helix	143	164	0.65
Non-Cytoplasmic	165	207	0.68
Transmembrane Helix	208	231	0.84
Cytoplasmic	232	238	0.67
Transmembrane Helix	239	259	0.78
Non-Cytoplasmic	260	284	0.80
Transmembrane Helix	285	305	0.88
Cytoplasmic	306	323	0.87
Transmembrane Helix	324	343	0.92
Non-Cytoplasmic	344	367	0.93
Transmembrane Helix	368	391	0.86
Cytoplasmic	392	434	0.78
Transmembrane Helix	435	462	0.75
Non-Cytoplasmic	463	467	0.43
Transmembrane Helix	468	486	0.87
Cytoplasmic	487	502	0.71
Transmembrane Helix	503	532	0.82
Non-Cytoplasmic	533	749	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPGRINHA RHLSEAEEEA ENYLEHFYNK SEPNKRRVSF VQRGAMNQAQ FDEKFDYNKP  60
   61 HLENELKKQA KKFVRRFYEP FTSFFALKLF IFDLIPILKW FPEYKWKTDL SLDIIGGITV 120
  121 GVMQVPQGIA YALLAKQPAI NGLYTSLFPP LIYMLFGTSR HASLGTFAVV SLMTGLSVEK 180
  181 LAAPTDYDPS SFNETDIDLV KLPSPTEVSC AITITMGLIL FVMGVLRLQF LTTYLSDQVI 240
  241 AGFTVGSSVH VLVSQLKTLL GIRGLPRHSG PFYLFRHLYD LVMSITRANP VSCGISIVSI 300
  301 IVLHFGKEFI NPFIKRKTKS NIPIPWELVI VILSTVFVAV TGVDTEAKVQ VVNKIPVGVP 360
  361 NFSLPSFYLI PQVLPDAISI TVVSISVWLS ISKMLAKRYN YELDSGQELF ALSFASISSS 420
  421 FIPSIPNSCS LSRTLVAVGA GCTTQLSIFF SSLIVFSVVI FLGTLLETLP MAALSAIICV 480
  481 ALQGMFRKFA DLIDLWKVSK IDFTIWVVSC VSTILLDVST GLIISVCFAL FTTILREQYP 540
  541 KWHLLASVKG TQDFRDAERY GETVYFKGIC IFRFDAPLLF HNVECFKKSI EKAYTEWQKS 600
  601 HEFYVLREER ETILNTKLDG SDESIDGKMF QTAQSTLNTH SPDILSRHFV IDCSGFTFID 660
  661 LMGVSALKEI FSDMRKRGIL VYFANAKAPV REMFEKCHFF NFVSKENFYP TMRDATSIAR 720
  721 QRQLELGFKD TGYVPEHDRL TEVLSSHPM