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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: letm-1
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRYASNAY HIGRYAQRLF ATGQRNRVFH QYIASTSLQT TSLRYASTDR SKVEYTLKML  60
   61 REDVQKQDEE AQKVLSLMKS DKDVATVKPP LKDRIIHELK HYYHGFRLLA LETRVSAKYL 120
  121 WTVLRGATLS RRERQQLVRT VSDLFRLVPF SFFIIVPFME LALPIFIKLF PGMLPSTFQE 180
  181 SSKEEEKWRK QVKLRVEMAK FLQDTIEEIG LERKTRNKES TRSLEFALFI KKVRNEGGYV 240
  241 SNEELLKFSK LFEDEITLDN LSMGQLRSLC RLMSINSLGS PEILRFQLNM KIRELKADDK 300
  301 QIAAEGGVDA LSSIDLQSAC RARGMRAIGV SEERLKEQLV QWLELSLNDK VPPALLLLSR 360
  361 TLYLPEEVSF PDRLKAIVQN LPDGLAETTK QKLTEMEGGQ IDHKARIELI RSIESAIANE 420
  421 KKDEEKKKKA AEEALKSKEE AEKAKVQEKE KLVDVAAQAI VHELKKDIYD AVASTSSTTE 480
  481 AKEPAAKPSE AKEEKKEDIT VDKKDLSHIE EIIVGGPIKE AKHDILGLRE KVLEHKEDLM 540
  541 EINSLDGAFA ETKIAKRLRH KLNSMIEDVD SMVDKLEDEK RNIREMLIDP TVENSVDLKK 600
  601 EREVRIQDVI DSLAKLKESK GEQADDGEQR ERIEALLKTI DEDSDGIVDK QLVLEVIELL 660
  661 EKHTDVHVSA AQMASMIGTL KKEDEVAGLT EEIRKVQSGN YQMPILPTGP SSADAFNQPQ 720
  721 GVYTASKQVP ARSEQEGVEQ KQQVENGPVG IPDVDTKVTS TLQQNSSKTS SSSTTKSTSD 780
  781 SKSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle