YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rhr-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	55	0.90
Transmembrane Helix	56	74	0.84
Cytoplasmic	75	81	0.61
Transmembrane Helix	82	103	0.83
Non-Cytoplasmic	104	117	0.69
Transmembrane Helix	118	137	0.92
Cytoplasmic	138	143	0.76
Transmembrane Helix	144	163	0.82
Non-Cytoplasmic	164	173	0.70
Transmembrane Helix	174	193	0.91
Cytoplasmic	194	205	0.92
Transmembrane Helix	206	225	0.90
Non-Cytoplasmic	226	240	0.84
Transmembrane Helix	241	260	0.94
Cytoplasmic	261	270	0.79
Transmembrane Helix	271	291	0.90
Non-Cytoplasmic	292	296	0.78
Transmembrane Helix	297	317	0.93
Cytoplasmic	318	331	0.92
Transmembrane Helix	332	353	0.90
Non-Cytoplasmic	354	388	0.94
Transmembrane Helix	389	410	0.91
Cytoplasmic	411	463	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPLHQNQL TLILGLFQVV FLVIFALYGS YDASALPSET KNVEEAARMT NLYPLFQDTH  60
   61 VMIFIGFGFL MTFLKRYGFS AVSINMLLAV FTIQWGIIVR GMASAHHGFK FTISLEQLLT 120
  121 ADFAAAVILI SMGAMLGKLS PSQYVIMAFF ETPVALIVEH ICVHNLQIND VGGSIIVHAF 180
  181 GAYFGLACAK GFGKKEQRGH TNEGSTYHTD IFAMIGAIFL WIYWPSFNAA VAATDDARQR 240
  241 AVANTFLSLC ACTMTTFLVS QAVDKHKRFD MVHIANSTLA GGVAIGTTAN VVLEPYHAMI 300
  301 IGVIAGAVSV IGYKYITPFL SEKLGIHDTC GVNNLHGMPG LIAGFASIAF LFIYDETRYP 360
  361 AQYDKIYPGM ARGEDRTRMF DEKTQALNQL MAIGLVFLAS TVSGYLTGLL LKLKIWDQVR 420
  421 DDEYYADGDY FETPGDYDFT SRIVTSVKQI EVAEYNPLSQ KEV