YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cln-3.1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.80
Transmembrane Helix	10	31	0.65
Non-Cytoplasmic	32	91	0.55
Transmembrane Helix	92	111	0.92
Cytoplasmic	112	118	0.46
Transmembrane Helix	119	142	0.85
Non-Cytoplasmic	143	148	0.45
Transmembrane Helix	149	171	0.87
Cytoplasmic	172	179	0.45
Transmembrane Helix	180	205	0.80
Non-Cytoplasmic	206	253	0.50
Transmembrane Helix	254	275	0.55
Cytoplasmic	276	323	0.59
Transmembrane Helix	324	343	0.94
Non-Cytoplasmic	344	351	0.60
Transmembrane Helix	352	373	0.91
Cytoplasmic	374	393	0.73
Transmembrane Helix	394	413	0.72
Non-Cytoplasmic	414	424	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNWTNFRDI LAFWLLGLCN NYGYVIMLSA AEDILDDQKG TNSSSTNSST CETHLDSRHC  60
   61 QSISTGAVLL ADNLPALVVQ TTFPFFMHRF PFGFRAFLVF LLQASSYFVV AYSKNIAMSL 120
  121 AGVCMASLGQ GIGEITFLAM AAHYIPETIA SWSSGTGGAG LIGSFSYAFI TQAGLSPSNT 180
  181 LLVQLFIPVV FAGAYFFLLT IPPTVYSPTI HPSTWIIPKN YDKDVFEAAE ARGDVLNTKK 240
  241 VPQRELGPLE RIKLIGPLLY LMVPLATVYT AEYMINQGLT ELIIFNCSQG LSLPLSSQYR 300
  301 WYQVLYQLGV FISRSSVKFF EMPLWLIWCL PILQCVNMIF FFFEAVYWFT PTIIIIFVLI 360
  361 VFEGLLGGSA YVNTYNKIHK KVNPDVREYS LSAASMGNSL GTNIAAFLSI PLYNWVCTMK 420
  421 APGR