YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08501
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFFWRDVL EYFKYFCVGC SVFLNTVLII LVLFRSPHSL GFYKYLMTYI YVFDLFYAVW  60
   61 DIITNPTVYS YGPAFVVFRN YDNSMFTREM SFYMVLVYCG CFAFSLACFG VHFMYRYGTV 120
  121 NNDFRERFLS GKKIYIIFAV PILCGSWWSV ISGVAFCFDE YSDEYLSQLN PICLIFRDAV 180
  181 KNDLNFNISS LASMVIFFYL PDENGKLHPH WKTFLVMTSI YTITFVSIFS VIFCGFKCYN 240
  241 CILQAMSITT VQSKISKSLQ HHVKSIFHTL IPMVLMYIPL FFVFALPLFN INFPYASTAI 300
  301 SATISIYLAI DPLPSMFIIK AYRKAVLGKL TNKLDACIIV FQNYLQSFYR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.75
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	44	0.60
Transmembrane Helix	45	64	0.73
Non-Cytoplasmic	65	91	0.81
Transmembrane Helix	92	115	0.91
Cytoplasmic	116	133	0.84
Transmembrane Helix	134	156	0.91
Non-Cytoplasmic	157	216	0.86
Transmembrane Helix	217	239	0.87
Cytoplasmic	240	265	0.88
Transmembrane Helix	266	286	0.93
Non-Cytoplasmic	287	294	0.70
Transmembrane Helix	295	319	0.79
Cytoplasmic	320	350	0.93